Papers

For interdisciplinary journals, the asterisk (*) indicates the (co) first authorship.

13. David F. Anderson and Jinsu Kim, Mixing times for two classes of stochastically modeled reaction networks, submitted, 2022.

12. Hyukpyo Hong, Bryan S. Hernandez, Jinsu Kim, and Jae Kyoung Kim, Computational translation framework identifies biochemical reaction networks with special topologies and their long-term dynamics, submitted, 2022.

11. Jinsu Kim*, Katherine Sheu*, Quen Cheng, Alexander Hoffmann, and German Enciso. Stochastic models of nucleosome dynamics reveal regulatory rules of stimulus-induced epigenome remodeling, Cell Reports, 40(2), 111076, 2022.

Errata 1: on page e9 Equation 17, K_{n-1,n}=p+qK_{n-2,n} so that K_{0,n}=(r/r-1)*(r^n-1)/(r-1)-n/(r-1). Errata 2: on page e9, T_{7,8}=p_6+q_6T_{6,8} so that T_{7,8}=1+(q_6/p_6)T_6,7}

10. German Enciso and Jinsu Kim, Accuracy of Multiscale Reduction for Stochastic Reaction Systems, SIAM Multiscale Modeling and Simulation, 19(4), 1633–1658, 2021. arXiv.

9. Hyuckpyo Hong*, Jinsu Kim*, M Ali Al-Radhawi, Eduardo Sontag, and Jae Kyoung Kim. Derivation of stationary distributions of biochemical reaction networks via structure transformation, Communications Biology, 4, 620, 2021.

8. German Enciso, Radek Erban and Jinsu Kim, Identifiability of Stochastically Modelled Reaction Networks, European Journal of Applied Mathematics, 1-23, 2021. arXiv

7. Jinsu Kim*, Jason Dark, German Enciso and Suzanne Sindi, Slack Reactants: A State-Space Truncation Framework to Estimate Quantitative Behavior of the Chemical Master Equation, The Journal of Chemical Physics. 153, 054117, 2020.

6. Enrico Bibbona*, Jinsu Kim and Carsten Wiuf, Stationary distributions of systems with Discreteness Induced Transitions, Journal of The Royal Society Interface. 1720200243, 2020.

5. David F. Anderson, Daniele Cappelletti, Jinsu Kim, and Tung Nguyen, Tier structure of strongly endotactic reaction networks, Stochastic Processes and their Applications, 130, 7218-7259, 2020.

4. David F. Anderson, Daniele Cappelletti and Jinsu Kim, Stochastically modeled weakly reversible reaction networks with a single linkage class, Journal of Applied Probability. 57(3), 792-810, 2020

3. Jinsu Kim* and German Enciso , Absolutely Robust Controllers for Chemical Reaction Networks, Journal of The Royal Society Interface 17: 20200031, 2020.

2. German Enciso and Jinsu Kim, Embracing noise in chemical reaction networks, Bulletin of Mathematical Biology. 81, 1261–1267, 2019.

1. David F. Anderson and Jinsu Kim, Some network conditions for positive recurrence of stochastically modeled reaction networks, SIAM Journal of Applied Mathematics, 78(5), 2692-2713, 2018.

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